Relevant publications

2019

  • Next generation sequencing based assessment of the alloreactive T cell receptor repertoire in kidney transplant patients during rejection: a prospective cohort study - BMC Nephrology, pp. 10, 2019 - C. Aschauer , K. Jelencsics , K. Hu, A. Heinzel, J. Vetter, T. Fraunhofer, S. Schaller, S. M. Winkler, L. Pimenov, G. Gualdoni, M. Eder, A. Kainz, H. Regele, R. Reindl-Schwaighofer, R. Oberbauer

2018

  • High-throughput Immune Repertoire Sequencing Analysis using the Software ImmunExplorer - Proceedings of the German Conference on Bioinformatics, Vienna, Österreich, 2018 - J. Vetter, S. M. Winkler, T. Fraunhofer, S. Schaller

2017

  • Natural protective immunity against grass pollen allergy is maintained by a diverse spectrum of response types - JACI, Vol. 140, No. 6, 2017 - A. Kurtaj, C. Hillebrand, G. Fichtinger, E. Hattinger, M. Lietzenmayer, Y. Machado, S. Scheiblhofer, A. Stoecklinger, T. Thalhamer, S. Suessner, M. Danzer, S. Keplinger, J. Weinberger, S. Schaller, S. M. Winkler, C. Gabriel, J. Thalhamer, R. Weiss - view

2015

  • Detailed Analysis of Clonality, Diversity, and Gene Frequency Distributions in B- and T-Cell Receptors based on NGS Data - Revolutionizing Next-Generation Sequencing: Tools and Technologies, Leuven, Belgium, 2015 - S. Schaller, J. Weinberger, M. Danzer, S. M. Winkler

  • ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data - BMC Bioinformatics, Vol. 16, No. 252, 2015 - S. Schaller, J. Weinberger, R. Jimenez-Heredia, M. Danzer, R. Oberbauer, C. Gabriel, S. M. Winkler - view

  • ImmunExplorer (IMEX): A detailed analysis of the health status of the immune system using NGS immunoglobulin and T cell receptor IMGT/HighV-QUEST data - 4th European Congress of Immunology, Vienna, Österreich, 2015 - S. Schaller, J. Weinberger, R. Jimenez-Heredia, M. Danzer, S. M. Winkler -

  • Modelling States of Human Adaptive Immune Systems by Analyzing B- and T-Cell Receptors using Machine Learning Proceedings of the Computer Aided Systems Theory EUROCAST 2015, Las Palmas de Gran Canaria, Spanien, 2015 - S. Schaller, J. Weinberger, M. Danzer, S. M. Winkler

  • Profiling the T- and B-cell receptor repertoire of a patient with acute kidney rejection by high-throughput sequencing - Proceedings of the 29th European Immunogenetics and Histocompatibility Conference, Geneva, Schweiz, 2015 - M. Danzer, J. Weinberger, R. Jimenez-Heredia, S. Schaller, S. Süssner, S. M. Winkler, J. Sunzenauer, R. Oberbauer, H. Steitzer, C. Gabriel

2014

  • ImmunExplorer: A Framework for NGS-based Characterization and Visualization of the Human Immune System - Proceedings of the 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA, USA, 2014 - S. Schaller, J. Weinberger, M. Danzer, S. M. Winkler

  • Mathematical Modeling of the Diversity in Human B and T Cell Receptors using Machine Learning - Proceedings of the 26th European Modeling and Simulation Symposium EMSS 2014, Bordeaux, France, 2014 - S. Schaller, J. Weinberger, M. Danzer, C. Gabriel, R. Oberbauer, S. M. Winkler