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N-acyl Taurines and Acylcarnitines Cause an Imbalance in Insulin Synthesis and Secretion Provoking β Cell Dysfunction in Type 2 Diabetes

Michaela Aichler, Daniela Borgmann, Jan Krumsiek, Achim Buck, Patrick E. MacDonald, Jocelyn E. Manning Fox, James Lyon, Peter E. Light, Susanne Keipert, Martin Jastroch, Annette Feuchtinger, Nikola S. Mueller, Na Sun, Andrew Palmer, Theodore Alexandrov, Martin Hrabe de Angelis, Susanne Neschen, Matthias H. Tschöp, Axel Walch - Cell Metabolism, Volume 25, Issue 6, p1334–1347

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Proceedings of the EuBIC Winter School 2017

Sander Willems, David Bouyssié, Matthieu David, Marie Locard-Paulet, Karl Mechtler, Veit Schwämmle, Julian Uszkoreit, Marc Vaudel, Viktoria Dorfer - Journal of Proteomics Vol. 161

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Predicting Glycemia in Diabetic Patients By Evolutionary Computation and Continuous Glucose Monitoring

J. Manuel Colmenar, Stephan M. Winkler, Gabriel Kronberger, Esther Maqueda, Marta Botella, J. Ignacio Hidalgo - Proceeding of the Genetic and Evolutionary Computation Conference GECCO 2016, conference companion, pp. 1393-1400, ACM

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Prediction del nivel de glucosa en sangre para pacientes con diabetes utilizando tecnicas evolutivas

J. Manuel Colmenar, Stephan M. Winkler, Gabriel Kronberger, Esther Maqueda, Marta Botella, Almudena Sanchez, Sergio Contador, Jose Manuel Velasco, Oscar Garnica, Juan Lanchares, and Ignacio Hidalgo - Proceedings of the XI Congreso Espanol de Metaheuristicas, Algoritmos Evolutivos y Bioinspirados (MAEB 2016), Salamanca, September 2016.

Single Molecule Florescence Microscopy and Machine Learning for Rhesus D Antigen Classification

Daniela Borgmann, Sandra Mayr, Helene Polin, Susanne Schaller, Viktoria Dorfer, Christian Gabriel, Stephan Winkler, and Jaroslaw Jacak - Scientific Reports 6, Article no. 32317

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Biomolecular Characterization of Putative Antidiabetic Herbal Extracts

Verena Stadlbauer, Renate Haselgrübler, Peter Lanzerstorfer, Birgit Plochberger, Daniela Borgmann, Jaroslaw Jacak, Stephan M. Winkler, Klaus Schröder, Otmar Höglinger, Julian Weghuber - PLOS ONE 11(1)

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Immune Repertoire Profiling Reveals that Clonally Expanded B and T Cells Infiltrating Diseased Human Kidneys Can also Be Tracked in the Blood

Johannes Weinberger, Raul Jimenez-Heredia, Susanne Schaller, Susanne Suessner, Judith Sunzenauer, Roman Reindl-Schwaighofer, Richard Weiss, Stephan Winkler, Christian Gabriel, Martin Danzer, Rainer Oberbauer - PLOS ONE 10(11)

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Data-Based Identification of Prediction Models for Glucose

J. Manuel Velasco, Stephan M. Winkler, J. Ignacio Hidalgo, Oscar Garnica, Juan Lanchares, J.Manuel Colmenar, Esther Maqueda, Marta Botella, and Jose-Antonio Rubio - Proceedings of the Genetic and Evolutionary Computation Conference GECCO 2015, conference companion, pp. 1327-1334, ACM

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Classifying Human Blood Samples Using Characteristics of Single Molecules and Cell Structures on Microscopy Images

Daniela Borgmann, Sandra Mayr, Helene Polin, Lisa Obritzberger, Susanne Schaller, Viktoria Dorfer, Jaroslaw Jacak, and Stephan M. Winkler:  Computer Aided Systems Theory - EUROCAST 2015 Springer Lecture Notes in Computer Science, Vol. 9520, pp. 310-317

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Classification of the States of Human Adaptive Immune Systems by Analyzing Immunoglobins and T Cell Receptors Using ImmunExplorer

Susanne Schaller, Johannes Weinberger, Raul Jimenez-Heredia, Martin Danzer, and Stephan M. Winkler - Computer Aided Systems Theory - EUROCAST 2015, Springer Lecture Notes in Computer Science, Vol. 9520, pp. 302-309

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Prediction of Stem Cell Differentiation in Human Amniotic Membrane Images Using Machine Learning

Lisa Obritzberger, Susanne Schaller, Viktoria Dorfer, Andrea Lindenmair, Susanne Wolbank, Simone Hennerbichler, Heinz Redl, and Stephan M. Winkler - Computer Aided Systems Theory - EUROCAST 2015, Springer Lecture Notes in Computer Science, Vol. 9520, pp. 318-325

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Prediction of Mineralization Degree in Human Amniotic Membrane Using Image Processing Techniques and Machine Learning

Lisa Obritzberger, Daniela Borgmann, Susanne Schaller, Viktoria Dorfer, Andrea Lindenmair, Susanne Wolbank, Heinz Redl, and Stephan M. Winkler - Proceedings of 11th Metaheuristics International Conference MIC 2015, Agadir, Morocco

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A Symbolic Regression Based Scoring System Improving Peptide Identifications for MS Amanda

Viktoria Dorfer, Sergey Maltsev, Stephan Dreiseitl, Karl Mechtler, and Stephan M. Winkler - Proceedings of the Genetic and Evolutionary Computation Conference GECCO 2015, Conference Companion, pp. 1335-1341, ACM

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Characterization of the Distance Relationship between Localized Serotonin Receptors and Glia Cells on Fluorescence Microscopy Images of Brain Tissue

Jaroslaw Jacak, Susanne Schaller, Daniela M. Borgmann, and Stephan M. Winkler - Microscopy and Microanalysis, Vol. 21, No. 4, Cambridge University Press

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ImmunExplorer (IMEX): A Software Framework for Diversity and Clonality Analyses of Immunoglobulins and T Cell Receptors on the Basis of IMGT/HighV-QUEST Preprocessed NGS Data

Susanne Schaller, Johannes Weinberger, Raul Jimenez Heredia, Martin Danzer, Rainer Oberbauer, Christian Gabriel, and Stephan M. Winkler - BMC Bioinformatics, Vol. 16, No. 252

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Identification and Classification of Objects and Motions in Microscopy Images of Biological Samples Using Heuristic Algorithms

Stephan M. Winkler, Susanne Schaller, Daniela Borgmann, Lisa Obritzberger, Viktoria Dorfer, Christian Haider, Sandra Mayr, Peter Lanzerstorfer, Claudia Loimayr, Simone Hennerbichler-Lugscheider, Andrea Lindenmair, Heinz Redl, Michael Affenzeller, Julian Weghuber, and Jaroslaw Jacak - In Studies in Computational Intelligence, APCASE 2014, Springer

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Data Based Prediction of Cancer Diagnoses Using Heterogeneous Model Ensembles - A Case Study for Breast Cancer, Melanoma, and Cancer in the Respiratory System

Stephan M. Winkler, Michael Affenzeller, Susanne Schaller, and Herbert Stekel - Proceeding of the Genetic and Evolutionary Computation Conference GECCO 2014, Conference Companion, ACM

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Identification of Endothelial Cell Morphology in Cornea Using Evolution Strategies

Lisa Obritzberger, Susanne Schaller, Viktoria Dorfer, Claudia Loimayr, Simone Hennerbichler, and Stephan M. Winkler - Proceedings of the 26th European Modeling and Simulation Symposium (EMSS2014), Bordeaux, France

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Mathematical Modeling of the Diversity in Human B and T Cell Receptors Using Machine Learning

Susanne Schaller, Johannes Weinberger, Martin Danzer, Christian Gabriel, Rainer Oberbauer, and Stephan M. Winkler - Proceedings of the 26th European Modeling and Simulation Symposium (EMSS2014), Bordeaux, France

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MS Amanda, a Universal Identification Algorithm Optimized for High Accuracy Tandem Mass Spectra

Viktoria Dorfer, Peter Pichler, Thomas Stranzl, Johannes Stadlmann, Thomas Taus, Stephan M. Winkler, and Karl Mechtler - Journal of Proteome Research, Vol. 13(8):3679-84

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Data-Based Prediction of Sentiments Using Heterogeneous Model Ensembles

Stephan M. Winkler, Susanne Schaller, Viktoria Dorfer, Michael Affenzeller, Michal Karpowicz, and Gerald Petz - Soft Computing, Special Issue on Hybrid and Ensemble Techniques in Soft Computing: Recent Advances and Emerging Trends. Springer, pp12

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Quantification and Kinetic Analysis of Grb2-EGFR Interaction on Micropatterned Surfaces for the Characterization of EGFR-modulating Substances

Peter Lanzerstorfer, Daniela Borgmann, Gerhard Schütz, Stephan M. Winkler, Otmar Höglinger, and Julian Weghuber - PLOS-ONE, Vol. 9, No. 3

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Identification of Novel Insulin Mimetic Drugs by Quantitative Total Internal Reflection Fluorescence (TIRF) Microscopy

Peter Lanzerstorfer, Verena Stadlbauer, Lilia Chtcheglova, Renate Haselgrübler, Daniela Borgmann, Jürgen Wruss, Peter Hinterdorfer, Klaus Rudolf Schröder, Stephan M. Winkler, Otmar Höglinger, and Julian Weghuber - British Journal of Pharmacology, 171(23):5237-5251, Wiley

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Bioanalytical Characterization of Apple Juice from 88 Grafted and Nongrafted Apple Varieties Grown in Upper Austria

Peter Lanzerstorfer, Jürgen Wruss, Stefan Huemer, Andrea Steininger, Ulrike Müller, Markus Himmelsbach, Daniela Borgmann, Stephan M. Winkler, Otmar Höglinger, and Julian Weghuber - Journal of Agricultural and Food Chemistry, 62(5):1047-1056, ACS Publications

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Evolutionary Identification of Cancer Predictors Using Clustered Data - A Case Study for Breast Cancer, Melanoma, and Cancer in the Respiratory System

Stephan M. Winkler, Michael Affenzeller, and Herbert Stekel - Proceeding of the Genetic and Evolutionary Computation Conference (GECCO 2013), conference companion, ISBN: 978-1- 4503-1964- 5, pp. 1463-1470. ACM

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Biophysical and biochemical characterization of insulin-dependent cellular systems in response to secondary plant metabolites

Peter Lanzerstorfer, Andrea Steininger, Verena Stadlbauer, Daniela M. Borgmann, Stephan M. Winkler, Otmar Höglinger, and Julian Weghuber - Tagungsband des 7. Forschungsforums der Österreichischen Fachhochschulen (Proceedings of the 7th Science Symposium of Austrian Universities for Applied Sciences)

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An Integrated Clustering and Classification Approach for the Analysis of Tumor Patient Data

Stephan M. Winkler, Michael Affenzeller, and Herbert Stekel -  Computer Aided Systems Theory - EUROCAST 2013, Springer Lecture Notes in Computer Science, 8111, pp. 388-395

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Statistical Analysis of the Relationship between Spots and Structures in Microscopy Images

Susanne Schaller, Jaroslaw Jacak, Michael Sams , and Stephan M. Winkler - Computer Aided Systems Theory - EUROCAST 2013, Springer Lecture Notes in Computer Science, 8111, pp. 211-218

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Cross Classification Approach for Feature Selection

Witold Jacak, Karin Pröll, and Stephan M. Winkler - Computer Aided Systems Theory - EUROCAST 2013, Springer Lecture Notes in Computer Science, 8111, pp. 52-58

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Variable Interaction Networks in Medical Data

Stephan M. Winkler, Gabriel Kronberger, Michael Affenzeller, and Herbert Stekel - International Journal of Privacy and Health Information Management, 1(2):1-16. IGI Publishing

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On the Use of Estimated Tumour Marker Classifications in Tumour Diagnosis Prediction - A Case Study for Breast Cancer

Stephan M. Winkler, Michael Affenzeller, Gabriel Kronberger, Michael Kommenda, Stefan Wagner, Viktoria Dorfer, Witold Jacak, and Herbert Stekel - International Journal of Simulation and Process Modelling, Vol. 8, No 1, pp. 29-41. Inderscience Publishers

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Neural Networks Based Feature Selection in Biological Data Analysis

Witold Jacak and Karin Pröll and Stephan M. Winkler - Advanced Methods and Applications in Computational Intelligence, Topics in Intelligent Engineering and Informatics, Vol. 6, pp. 79-94. Springer

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On the Identification of Virtual Tumor Markers and Tumor Diagnosis Predictors Using Evolutionary Algorithms

Stephan M. Winkler, Michael Affenzeller, Gabriel K. Kronberger, Michael Kommenda, Stefan Wagner, Witold Jacak, and Herbert Stekel - Advanced Methods and Applications in Computational Intelligence, Topics in Intelligent Engineering and Informatics, Vol. 6, pp. 95-122. Springer

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Analysis of the Relevance of Blood Parameters and Virtual Tumor Markers in Tumor Diagnosis Prediction

Stephan M. Winkler, Michael Affenzeller, and Herbert Stekel - Extended Abstracts of the 14th International Asia Pacific Conference on Computer Aided System Theory, Sydney, February 6-8, 2012, pp. 14-17.

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MetExtract: A new software tool for the automated comprehensive extraction of metabolite-derived LC/MS signals in metabolomics research

Christoph Büschl, Bernhard Kluger, Franz Berthiller, Gerald Lirk, Stephan M. Winkler, Rudolf Krska, and Rainer Schuhmacher - Bioinformatics, Oxford Journals, 28(5): 736-738

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Analysis of Single-Objective and Multi-Objective Evolutionary Algorithms in Keyword Cluster Optimization

Viktoria Dorfer, Stephan M. Winkler, Thomas Kern, Gerald Petz, and Patrizia Faschang - EUROCAST`11 Proceedings of the 13th International Conference on Computer Aided Systems Theory, Vol. I, pp. 408-415, Springer-Verlag Berlin Heidelberg

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Analysis of Selected Evolutionary Algorithms in Feature Selection and Parameter Optimization for Data Based Tumor Marker Modeling

Stephan M. Winkler, Michael Affenzeller, Gabriel Kronberger, Michael Kommenda, Stefan Wagner, Witold Jacak, and Herbert Stekel - EUROCAST`11 Proceedings of the 13th International Conference on Computer Aided Systems Theory, Vol. I, pp. 335-342, Springer-Verlag Berlin Heidelberg

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Identification of Patterns in Microscopy Images of Biological Samples Using Evolution Strategies

Daniela M. Borgmann, Julian Weghuber, Susanne Schaller, Jaroslaw Jacak, and Stephan M. Winkler - Proceedings of the 24th European Modeling and Simulation Symposium (EMSS2012), pp. 271-276. Vienna, Austria

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µDetect: Design of a Framework for Optimized Structure Analysis in Fluorescence Microscopy Images

Susanne Schaller, Stephan M. Winkler, Julian Weghuber, Michael Sams, Jaroslaw Jacak - Tagungsband des 6. Forschungsforums der Österreichischen Fachhochschulen (Proceedings of the 6th Science Symposium of Austrian Universities for Applied Sciences), Vol. 1, pp. 125-130. FH JOANNEUM, 2012. ISBN: 3-902103- 37-X

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Variable Interaction Networks in Medical Data

Stephan M. Winkler, Michael Affenzeller, Gabriel Kronberger, Michael Kommenda, Stefan Wagner, Witold Jacak, and Herbert Stekel - Proceedings of the 24 th European Modeling and Simulation Symposium (EMSS2012), pp. 265-270. Vienna, Austria

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A new scoring function for HCD spectra

Viktoria Dorfer, Peter Pichler, Stephan M. Winkler, and Karl Mechtler - Proceedings of the 11th European Conference on Computational Biology (ECCB), Workshop on Computational Proteomics, Basel

Analysis of Protein-Protein Interactions in Live Cells - The µ-Patterning Approach

Peter Lanzerstorfer, Andrea Steininger, Otmar Höglinger, Julian Weghuber, Daniela Borgmann, Susanne Schaller, Stephan M. Winkler, Mario Brameshuber, Stefan Sunzenauer, and Gerhard Schütz - In Basic Methods in Protein Purification and Analysis, iConcept Press

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Using Query Extension and User Feedback to Improve PubMed Search

Viktoria Dorfer, Sophie A. Blank, Stephan M. Winkler, Thomas Kern, Gerald Petz, and Patrizia Faschang - Proceedings of the 23 rd European Modeling and Simulation Symposium (EMSS2011), pp. 433-438. Rome, Italy

Identification of cancer diagnosis estimation models using evolutionary algorithms: a case study for breast cancer, melanoma, and cancer in the respiratory system

Stephan M. Winkler, Michael Affenzeller, Witold Jacak, and Herbert Stekel - Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference - GECCO 2011, Companion Material Proceedings, Dublin, Ireland, July 12-16, 2011, pp. 503-510. ACM, 2011, ISBN 978-1- 4503-0690- 4.

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On the performance of evolutionary algorithms in biomedical keyword clustering

Viktoria Dorfer, Stephan M. Winkler, Thomas Kern, Sophie A. Blank, Gerald Petz, and Patrizia Faschang - Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference - GECCO 2011, Companion Material Proceedings, Dublin, Ireland, July 12-16, 2011, pp. 511-518. ACM, 2011, ISBN 978-1- 4503-0690- 4.

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On the Use of Estimated Tumor Marker Classifications in Tumor Diagnosis Prediction - A Case Study for Breast Cancer

Stephan M. Winkler, Michael Affenzeller, Gabriel Kronberger, Michael Kommenda, Stefan Wagner, Witold Jacak, and Herbert Stekel - Proceedings of the 23rd European Modeling and Simulation Symposium (EMSS2011), pp. 454-459. Rome, Italy

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Feature Selection in the Analysis of Tumor Marker Data Using Evolutionary Algorithms

Stephan M. Winkler, Michael Affenzeller, Gabriel Kronberger, Stefan Wagner, Witold Jacak, and Herbert Stekel - Proceedings of the 21st European Modeling and Simulation Symposium (EMSS2010), Fez, Morocco, October 2010, pp. 1-6. Fez, Morocco

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Classification of Tumor Marker Values Using Heuristic Data Mining Methods

Stephan M. Winkler, Michael Affenzeller, Witold Jacak, and Herbert Stekel - Proceedings of the GECCO 2010 Workshop on Medical Applications of Genetic and Evolutionary Computation (MedGEC 2010), paper no. ws5p2. The Association for Computing Machinery (ACM)

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Heuristische Modellierung der Krankheitsverlaufsdaten von Menschen mit Alzheimer Demenz

Stephan M. Winkler, Stefanie Auer, and Michael Affenzeller - Tagungsband des 4. Forschungsforums der Österreichischen Fachhochschulen (Proceedings of the 4th Science Symposium of Austrian Universities for Applied Sciences), pp. 23-28. Österreichische Fachhochschulkonferenz (FHK), 2010. ISBN: 978-3- 200-01809-9.

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Optimization of Keyword Grouping in Biomedical Information Retrieval Using Evolutionary Algorithms

Viktoria Dorfer, Stephan M. Winkler, Gerald Petz, Andreas Greiner, and Thomas Kern - Proceedings of the 21st European Modeling and Simulation Symposium (EMSS2010), Fez, Morocco, October 2010, pp. 25-30. Fez, Morocco

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Using Enhanced Genetic Programming Techniques for Evolving Classifiers in the Context of Medical Diagnosis 

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - Genetic Programming and Evolvable Machines Vol. 10, No. 2, pp. 111-140. Springer

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Genetic Algorithms and Genetic Programming - Modern Concepts and Practical Applications

Michael Affenzeller, Stephan M. Winkler, Stefan Wagner, and Andreas Beham - Chapman & Hall / CRC Press. ISBN 978-1584886297.

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Analyse von Patientendaten und Evolutionäres Design von Virtuellen Sensoren für Erkrankungen (Analysis of Patient Data and Evolutionary Design of Virtual Sensors for Diseases)

Stephan M. Winkler, Michael Affenzeller, Stefan Wagner, and Gabriel Kronberger - Tagungsband des 3. Forschungsforums der Österreichischen Fachhochschulen (Proceedings of the 3rd Science Symposium of Austrian Universities for Applied Sciences), pp. 56-61. Österreichische Fachhochschulkonferenz (FHK)

Heuristic Modeling of the Mental Progress of Persons with Normal Brain Aging, Subjective Cognitive Impairment, Mild Cognitive Impairment, Alzheimer´s Disease and Related Dementia Disorders

Stephan M. Winkler, Stefanie Auer, Michael Affenzeller, Yvonne Donabauer, and Barry Reisberg - Proceedings of the 20th European Modeling and Simulation Symposium (EMSS2009), pp. 167-172. Puerto de la Cruz, Tenerife, Spain

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Variables Diversity in Systems Identification Based on Extended Genetic Programming

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - Journal of Systems Science, Vol. 34, No. 2, pp. 27-34

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Advanced Genetic Programming Based Machine Learning

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - Journal of Mathematical Modelling and Algorithms, ISSN 1570-1166 (print), 1572-9214 (online), DOI 10.1007/s10852-007- 9065-6. Springer Netherlands

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Using Enhanced Genetic Programming Techniques for Evolving Classifiers in the Context of Medical Diagnosis - An Empirical Study

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - Proceedings of the GECCO 2006 Workshop on Medical Applications of Genetic and Evolutionary Computation (MedGEC 2006), paper no. WKSP115. The Association for Computing Machinery (ACM), 2006.

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Sets of Receiver Characteristic Curves and their Use in the Evaluation of Multi-Class Classification

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - Proceedings of the Genetic and Evolutionary Computation Conference GECCO 2006, Vol. 2, pp. 1601-1602. The Association for Computing Machinery (ACM), ISBN 1-59593-186- 4, ACM Order Number 910060. 2006.

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Advances in Applying Genetic Programming to Machine Learning, Focussing on Classification Problems

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - Proceedings of the 9 th International Workshop on Nature Inspired Distributed Computing NIDISC´06, part of the Proceedings of the 20th IEEE International Parallel&Distributed Processing Symposium IPDPS 2006, IEEE Catalog Number: 06TH8860, ISBN: 1-4244- 0054-6,ISSN: 1530-2075, paper no. NIDISC-012. IEEE, 2006.

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Automatic Data Based Patient Classification Using Genetic Programming

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - In Cybernetics and Systems 2006, Vol. 1, pp. 251-256. Austrian Society for Cybernetic Studies, 2006.

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A Genetic Programming Based Tool for Supporting Bioinformatical Classification Problems

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - Proceedings of the FH Science Day 2005, pp. 3-10. Shaker Verlag, 2005.

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Solving Multiclass Classification Problems by Genetic Programming

Stephan M. Winkler, Michael Affenzeller, and Stefan Wagner - Proceedings of The 9th World Multi-Conference on Systemics, Cybernetics and Informatics SCI 2005, Vol. 1, pp. 48-53. International Institute of Informatics and Systemics, 2005.

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