DATA & DOWNLOADS
MS Annika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
MS Ana
MS Ana is a scoring system to identify peptides in tandem mass spectrometry data using a library of previously identified spectra.
MS Amanda
MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins
IMEX
ImmunExplorer (IMEX) uses preprocessed next-generation high-throughput and deep sequencing (NGS) data from human immunoglobulins or antibodies (IG) and T cell receptors (TCR) derived from the international ImMunoGeneTics (IMGT®) information system® .
IMDA
The ImmunoDataAnalyser (IMDA) pipeline provides various methods for analysing immunologic next-generation sequencing (NGS) data (immunoglobulins and T cell receptors repertoires). It is especially built for first interpretations of crucial measures (e.g., clonality and diversity), and for quality control.
IMPI
IMPI is a stand-alone software and implements algorithms which allow for UMI tagged NGS data processing and the analysis of minor allele frequencies.
PhoStar
PhoStar splits input files of MS/MS fragment ion peptide spectra into two parts: the spectra that are likely to have originated from phosphorylated peptides and those who are not.
Spotty
Spotty is a software tool that enables and simplifies the analysis of μpatterning and gfp image data
NanoDetect
NanoDetect enables the analysis of single molecules, including cell detection, pattern recognition, etc.